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Genome Annotation

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Evolution of the Sequence Ontology terms and relationships

Evolution of the Sequence Ontology terms and relationships,10.1016/j.jbi.2010.03.002,Journal of Biomedical Informatics,Christopher J. Mungall,Colin R.

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Evolution of the Sequence Ontology terms and relationships (Citations: 5)


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The Sequence Ontology is undergoing reform to meet the standards of the OBO Foundry. Here we report some of the incremental changes and improvements made to SO. We also propose new relationships to better define the mereological, spatial and temporal aspects of biological sequence.

Journal: Journal of Biomedical Informatics - JBI , vol. 44, no. 1, pp. 87-93, 2011

DOI: 10.1016/j.jbi.2010.03.002

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- ...Furthermore, we added the axiom that exon is integral-part-of a transcript to the Sequence Ontology (SO) [23], in accordance with the SO developer’s proposal for defining SO classes [24]...
Robert Hoehndorf, et al. Relations as patterns: bridging the gap between OBO and OWL

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Relations in biomedical ontologies (Citations: 327)

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Citations (5)

Cross-product extensions of the Gene Ontology (Citations: 6)

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Journal: Journal of Biomedical Informatics - JBI , vol. 44, no. 1, pp. 80-86, 2011

Relations as patterns: bridging the gap between OBO and OWL (Citations: 3)

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Journal: BMC Bioinformatics , vol. 11, no. 1, pp. 441-8, 2010

Ontology consolidation in bioinformatics

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Conference: Asia-Pacific Conference on Conceptual Modelling - APCCM , pp. 15-22, 2010

Calling International Rescue: knowledge lost in literature and data landslide! (Citations: 5)

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Journal: Biochemical Journal - BIOCHEM J , vol. 424, no. 3, pp. 317-333, 2009

Experiences Using Logic Programming in Bioinformatics (Citations: 1)

Conference: International Conference on Logic Programming/Joint International Conference and Symposium on Logic Programming - ICLP(JICSLP) , pp. 1-21, 2009