The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored,10.1093/nar/gkq973,Nucleic Acids Research,Dam

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored (Citations: 32)


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Journal: Nucleic Acids Research - NAR , vol. 39, no. Database-I, pp. 561-568, 2011

DOI: 10.1093/nar/gkq973

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Citation Context (26)

- ...). In the STRING 9.0 database ...
Roman Häuser, et al. RsfA (YbeB) Proteins Are Conserved Ribosomal Silencing Factors
- ... (...
Roi Feingersch, et al. Potential for phosphite and phosphonate utilization by Prochlorococcus
- ..., we identified groups of genes that show concerted shifts of gene expression levels in subsets of samples (so-called transcription modules). We then selected transcription modules that showed significant enrichments for X-linked genes and a decreased expression in eutherians (identifiers 421, 618, and 634) or therians (identifiers 507, 521, and 563). In these modules, we could thus identify 40 X-linked and 413 autosomal genes whose expression levels decreased at the same time in the common ancestor of therians or eutherians (i.e., soon after sex chromosome origination). We then retrieved protein–protein interaction data for human and mouse from the version 8.3 of the STRING database ...
Philippe Julien, et al. Mechanisms and Evolutionary Patterns of Mammalian and Avian Dosage Com...
- ...) to predict both direct and indirect interactions ...
Ling Teng, et al. Proteomic Identification of Calumenin as a G551D - CFTR Associated Pro...
- ...combine gene sequence similarity and gene proximity across many genomes to establish path-based scores as a functional dependence measure, which is then used to rank candidate genes for pathway holes, including orphan enzymatic activities. Other resources can be exploited manually for finding candidate genes for orphan enzymes using context-based functional dependency measures, such as the STRING ...
Adam Alexander Thil Smith, et al. The CanOE Strategy: Integrating Genomic and Metabolic Contexts across ...

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Citations (32)

RsfA (YbeB) Proteins Are Conserved Ribosomal Silencing Factors

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Journal: PLOS Genetics - PLOS GENET , vol. 8, no. 7, 2012

Potential for phosphite and phosphonate utilization by Prochlorococcus

, , , , , ,

Journal: Isme Journal - ISME J , vol. 6, no. 4, pp. 827-834, 2012

Mechanisms and Evolutionary Patterns of Mammalian and Avian Dosage Compensation

, , , , , , , ,

Journal: PLOS Biology - PLOS BIOL , vol. 10, no. 5, 2012

Proteomic Identification of Calumenin as a G551D - CFTR Associated Protein

, , , , , , ,

Journal: PLOS One , vol. 7, no. 6, 2012

The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes

, , , ,

Journal: PLOS Computational Biology - PLOS COMPUT BIOL , vol. 8, no. 5, 2012


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The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored,10.1093/nar/gkq973,Nucleic Acids Research,Dam

Citation Context (26)

Roman Häuser, et al. RsfA (YbeB) Proteins Are Conserved Ribosomal Silencing Factors

Roi Feingersch, et al. Potential for phosphite and phosphonate utilization by Prochlorococcus

Philippe Julien, et al. Mechanisms and Evolutionary Patterns of Mammalian and Avian Dosage Com...