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Keywords
(2)
Functional Annotation
Conserved Domain Database
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CDD: a Conserved Domain Database for the functional annotation of proteins
CDD: a Conserved Domain Database for the functional annotation of proteins,10.1093/nar/gkq1189,Nucleic Acids Research,Aron Marchler-Bauer,Shennan Lu,J
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CDD: a Conserved Domain Database for the functional annotation of proteins
(
Citations: 44
)
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Aron Marchler-Bauer
,
Shennan Lu
,
John B. Anderson
,
Farideh Chitsaz
,
Myra K. Derbyshire
,
Carol DeWeese-Scott
,
Jessica H. Fong
,
Lewis Y. Geer
,
Renata C. Geer
,
Noreen R. Gonzales
,
Marc Gwadz
,
David I. Hurwitz
http://academic.research.microsoft.com/io.ashx?type=5&id=39326698&selfId1=0&selfId2=0&maxNumber=12&query=
Journal:
Nucleic Acids Research - NAR
, vol. 39, no. Database-I, pp. 225-229, 2011
DOI:
10.1093/nar/gkq1189
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The following links allow you to view full publications. These links are maintained by other sources not affiliated with Microsoft Academic Search.
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www.informatik.uni-trier.de
)
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dx.doi.org
)
Citation Context
(27)
... Therefore, we aligned each putative DANGER member against PSSMs for the MAB-21 domain as defined by NCBI Conserved Domain Database (CDD)
...
Gaurav Bhardwaj
,
et al.
PHYRN: A Robust Method for Phylogenetic Analysis of Highly Divergent S...
... The NCBI Blast server also predicted putative conserved domains by comparison with the Conserved Domain Databas
...
François Delavat
,
et al.
Amylases without known homologues discovered in an acid mine drainage:...
... The resulting annotation was carefully revised by using conserved domain BLAST
...
Manuel Martinez-Garcia
,
et al.
Capturing Single Cell Genomes of Active Polysaccharide Degraders: An U...
...,
...
Lena Poppinga
,
et al.
Identification and Functional Analysis of the SLayer Protein SplA of P...
...as a source of structure data on protein complexes. Protein domains are structural and functional units of proteins and many proteins evolve through domain shuffling, thereby acquiring new functions and properties. Domains over time have evolved different binding modes to interact with various binding partners. Hence to record biologically meaningful protein-protein interactions we used domains as units of interaction. We annotated domains on each protein chain using the Conserved Domain Search server (CD-Search) which provides Conserved Domain (CDD)
...
Manoj Tyagi
,
et al.
Homology Inference of Protein-Protein Interactions via Conserved Bindi...
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Citations
(44)
PHYRN: A Robust Method for Phylogenetic Analysis of Highly Divergent Sequences
Gaurav Bhardwaj
,
Kyung Dae Ko
,
Yoojin Hong
,
Zhenhai Zhang
,
Ngai Lam Ho
,
Sree V. Chintapalli
,
Lindsay A. Kline
,
Matthew Gotlin
,
David Nicholas Hartranft
,
Morgen E. Patterson
,
Foram Dave
,
Evan J. Smith
http://academic.research.microsoft.com/io.ashx?type=5&id=57403664&selfId1=0&selfId2=0&maxNumber=12&query=
Journal:
PLOS One
, vol. 7, no. 4, 2012
Amylases without known homologues discovered in an acid mine drainage: significance and impact
François Delavat
,
Vincent Phalip
,
Anne Forster
,
Frédéric Plewniak
,
Marie-Claire Lett
,
Didier Lièvremont
Published in 2012.
Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia
Manuel Martinez-Garcia
,
David M. Brazel
,
Brandon K. Swan
,
Carol Arnosti
,
Patrick S. G. Chain
,
Krista G. Reitenga
,
Gary Xie
,
Nicole J. Poulton
,
Monica Lluesma Gomez
,
Dashiell E. D. Masland
,
Brian Thompson
,
Wendy K. Bellows
http://academic.research.microsoft.com/io.ashx?type=5&id=57403910&selfId1=0&selfId2=0&maxNumber=12&query=
Journal:
PLOS One
, vol. 7, no. 4, 2012
Identification and Functional Analysis of the SLayer Protein SplA of Paenibacillus larvae, the Causative Agent of American Foulbrood of Honey Bees
Lena Poppinga
,
Bettina Janesch
,
Anne Fünfhaus
,
Gerhard Sekot
,
Eva Garcia-Gonzalez
,
Gillian Hertlein
,
Kati Hedtke
,
Christina Schäffer
,
Elke Genersch
Journal:
PLOS Pathogens - PLOS PATHOG
, vol. 8, no. 5, 2012
Homology Inference of Protein-Protein Interactions via Conserved Binding Sites
Manoj Tyagi
,
Ratna R. Thangudu
,
Dachuan Zhang
,
Stephen H. Bryant
,
Thomas Madej
,
Anna R. Panchenko
Journal:
PLOS One
, vol. 7, no. 1, 2012